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Pymicro Data Platform: The Sample Data and Microstructure Classes User Guide
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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Q
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R
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U
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V
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W
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Z
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__contains__() (pymicro.core.samples.SampleData method)
__del__() (pymicro.core.samples.SampleData method)
__getattribute__() (pymicro.core.samples.SampleData method)
__getitem__() (pymicro.core.samples.SampleData method)
__init__() (pymicro.core.samples.SampleData method)
(pymicro.crystal.lattice.Crystal method)
(pymicro.crystal.lattice.CrystallinePhase method)
(pymicro.crystal.lattice.HklObject method)
(pymicro.crystal.lattice.Lattice method)
(pymicro.crystal.lattice.SlipSystem method)
(pymicro.crystal.microstructure.Grain method)
(pymicro.crystal.microstructure.Microstructure method)
(pymicro.crystal.microstructure.Orientation method)
(pymicro.crystal.texture.PoleFigure method)
(pymicro.crystal.texture.TaylorModel method)
(pymicro.xray.dct.DctForwardSimulation method)
(pymicro.xray.detectors.Detector2d method)
(pymicro.xray.detectors.Mar165 method)
(pymicro.xray.detectors.PerkinElmer1620 method)
(pymicro.xray.detectors.RegArrayDetector2d method)
(pymicro.xray.detectors.Varian2520 method)
(pymicro.xray.detectors.Xpad method)
(pymicro.xray.experiment.Experiment method)
(pymicro.xray.experiment.ForwardSimulation method)
(pymicro.xray.experiment.ObjectGeometry method)
(pymicro.xray.experiment.Sample method)
(pymicro.xray.experiment.SlitsGeometry method)
(pymicro.xray.experiment.XraySource method)
(pymicro.xray.fitting.Cosine method)
(pymicro.xray.fitting.FitFunction method)
(pymicro.xray.fitting.Gaussian method)
(pymicro.xray.fitting.Lorentzian method)
(pymicro.xray.fitting.Parameter method)
(pymicro.xray.fitting.SumOfFitFunction method)
(pymicro.xray.fitting.Voigt method)
(pymicro.xray.laue.LaueForwardSimulation method)
(pymicro.xray.xray_utils.Element method)
__repr__() (pymicro.core.samples.SampleData method)
A
add_alias() (pymicro.core.samples.SampleData method)
add_animation() (pymicro.view.vtk_anim.vtkAnimationScene method)
add_attributes() (pymicro.core.samples.SampleData method)
add_data_array() (pymicro.core.samples.SampleData method)
add_detector() (pymicro.xray.experiment.Experiment method)
add_field() (pymicro.core.samples.SampleData method)
add_grain_to_3d_scene() (in module pymicro.view.vtk_utils)
add_grains() (pymicro.crystal.microstructure.Microstructure method)
add_grains_in_map() (pymicro.crystal.microstructure.Microstructure method)
add_grid_time() (pymicro.core.samples.SampleData method)
add_group() (pymicro.core.samples.SampleData method)
add_hklplane_to_grain() (in module pymicro.view.vtk_utils)
add_HklPlanes_with_orientation_in_grain() (in module pymicro.view.vtk_utils)
add_image() (pymicro.core.samples.SampleData method)
add_image_from_field() (pymicro.core.samples.SampleData method)
add_IPF_maps() (pymicro.crystal.microstructure.Microstructure method)
add_local_orientation_axes() (in module pymicro.view.vtk_utils)
add_mesh() (pymicro.core.samples.SampleData method)
add_mesh_from_image() (pymicro.core.samples.SampleData method)
add_parameter() (pymicro.xray.fitting.FitFunction method)
add_phase() (pymicro.crystal.microstructure.Microstructure method)
add_plane_to_grid() (in module pymicro.view.vtk_utils)
add_slip_system_to_grain() (in module pymicro.view.vtk_utils)
add_string_array() (pymicro.core.samples.SampleData method)
add_table() (pymicro.core.samples.SampleData method)
add_tablecols() (pymicro.core.samples.SampleData method)
add_to_image() (in module pymicro.xray.dct)
add_to_index() (pymicro.core.samples.SampleData method)
add_vtk_mesh() (pymicro.crystal.microstructure.Grain method)
all_dif_spots() (in module pymicro.xray.dct)
alpha_cmap() (in module pymicro.view.vol_utils)
angle_between_4indices_directions() (pymicro.crystal.lattice.HklDirection static method)
angle_between_directions() (pymicro.crystal.lattice.HklDirection static method)
angle_with_direction() (pymicro.crystal.lattice.HklDirection method)
angles_to_pixels() (pymicro.xray.detectors.RegArrayDetector2d method)
append_string_array() (pymicro.core.samples.SampleData method)
append_table() (pymicro.core.samples.SampleData method)
apply_orientation_to_actor() (in module pymicro.view.vtk_utils)
apply_rotation_to_actor() (in module pymicro.view.vtk_utils)
apply_tilts() (pymicro.xray.detectors.RegArrayDetector2d method)
apply_translation_to_actor() (in module pymicro.view.vtk_utils)
ask_for_map_file() (in module pymicro.view.vtk_utils)
atom_scat_factor_function() (in module pymicro.xray.xray_utils)
auto_min_max() (in module pymicro.view.vol_utils)
axes_actor() (in module pymicro.view.vtk_utils)
Axis2OrientationMatrix() (pymicro.crystal.microstructure.Orientation static method)
azimuthal_regroup() (pymicro.xray.detectors.Detector2d method)
B
base_centered_monoclinic() (pymicro.crystal.lattice.Lattice static method)
base_centered_orthorhombic() (pymicro.crystal.lattice.Lattice static method)
body_centered_cubic() (pymicro.crystal.lattice.Lattice static method)
body_centered_orthorhombic() (pymicro.crystal.lattice.Lattice static method)
body_centered_tetragonal() (pymicro.crystal.lattice.Lattice static method)
box_3d() (in module pymicro.view.vtk_utils)
bragg_angle() (pymicro.crystal.lattice.HklPlane method)
brass() (pymicro.crystal.microstructure.Orientation static method)
build_grain_table_from_grain_map() (pymicro.crystal.microstructure.Microstructure method)
build_line_mesh() (in module pymicro.view.vtk_utils)
build_list() (in module pymicro.xray.laue)
C
circle_line_3d() (in module pymicro.view.vtk_utils)
clean_grain_map() (pymicro.crystal.microstructure.Microstructure method)
clear_data() (pymicro.xray.detectors.Detector2d method)
(pymicro.xray.detectors.RegArrayDetector2d method)
color_bar() (in module pymicro.view.vtk_utils)
compute() (pymicro.xray.fitting.FitFunction method)
(pymicro.xray.fitting.SumOfFitFunction method)
compute_affine_transform() (in module pymicro.view.vol_utils)
compute_all_schmid_factors() (pymicro.crystal.microstructure.Orientation method)
compute_corrected_image() (pymicro.xray.detectors.RegArrayDetector2d method)
(pymicro.xray.detectors.Xpad method)
compute_ellipsis() (in module pymicro.xray.laue)
compute_geometry() (pymicro.xray.detectors.RegArrayDetector2d method)
(pymicro.xray.detectors.Xpad method)
compute_grain_aspect_ratios() (pymicro.crystal.microstructure.Microstructure method)
compute_grain_bounding_box() (pymicro.crystal.microstructure.Microstructure method)
compute_grain_center() (pymicro.crystal.microstructure.Microstructure method)
compute_grain_equivalent_diameters() (pymicro.crystal.microstructure.Microstructure method)
compute_grain_sphericities() (pymicro.crystal.microstructure.Microstructure method)
compute_grain_volume() (pymicro.crystal.microstructure.Microstructure method)
compute_grains_geometry() (pymicro.crystal.microstructure.Microstructure method)
compute_grains_map_table_intersection() (pymicro.crystal.microstructure.Microstructure method)
compute_instrument_transformation_matrix() (pymicro.crystal.microstructure.Orientation static method)
compute_Laue_pattern() (in module pymicro.xray.laue)
compute_m_factor() (pymicro.crystal.microstructure.Orientation static method)
compute_mean_orientation() (pymicro.crystal.microstructure.Orientation static method)
compute_mesh_elements_normals() (pymicro.core.samples.SampleData method)
compute_step() (pymicro.crystal.texture.TaylorModel method)
compute_tilt_matrix() (pymicro.xray.detectors.RegArrayDetector2d static method)
compute_TwoTh_Psi_arrays() (pymicro.xray.detectors.RegArrayDetector2d method)
(pymicro.xray.detectors.Xpad method)
compute_XG_angle() (pymicro.crystal.microstructure.Orientation method)
confidence_index() (in module pymicro.xray.laue)
contourFilter() (in module pymicro.view.vtk_utils)
copper() (pymicro.crystal.microstructure.Orientation static method)
copy_sample() (pymicro.core.samples.SampleData static method)
(pymicro.crystal.microstructure.Microstructure static method)
Cosine (class in pymicro.xray.fitting)
create_elset_ids_field() (pymicro.core.samples.SampleData method)
create_grain_ids_field() (pymicro.crystal.microstructure.Microstructure method)
create_IPF_map() (pymicro.crystal.microstructure.Microstructure method)
create_orientation_field() (pymicro.crystal.microstructure.Microstructure method)
create_orientation_map() (pymicro.crystal.microstructure.Microstructure method)
create_pf_contour() (pymicro.crystal.texture.PoleFigure method)
crop() (pymicro.crystal.microstructure.Microstructure method)
Crystal (class in pymicro.crystal.lattice)
crystal_3d() (in module pymicro.view.vtk_utils)
crystal_vertices() (in module pymicro.view.vtk_utils)
CrystallinePhase (class in pymicro.crystal.lattice)
cube() (pymicro.crystal.microstructure.Orientation static method)
cubic (pymicro.crystal.lattice.Symmetry attribute)
cubic() (pymicro.crystal.lattice.Lattice static method)
D
data_outline() (in module pymicro.view.vtk_utils)
dct_omega_angles() (pymicro.crystal.microstructure.Grain method)
(pymicro.crystal.microstructure.Orientation method)
dct_projection() (pymicro.xray.dct.DctForwardSimulation method)
DctForwardSimulation (class in pymicro.xray.dct)
default() (pymicro.xray.experiment.ExperimentEncoder method)
density (pymicro.xray.xray_utils.Element property)
density_from_symbol() (in module pymicro.xray.xray_utils)
density_from_Z() (in module pymicro.xray.xray_utils)
Detector2d (class in pymicro.xray.detectors)
detector_3d() (in module pymicro.view.vtk_utils)
diffracted_intensity() (in module pymicro.xray.laue)
diffracted_vector() (in module pymicro.xray.laue)
diffracting_normals_vector() (in module pymicro.xray.laue)
dilate_grain() (pymicro.crystal.microstructure.Microstructure method)
dilate_grains() (pymicro.crystal.microstructure.Microstructure method)
dilate_labels() (pymicro.crystal.microstructure.Microstructure static method)
direction() (pymicro.crystal.lattice.HklDirection method)
discretize() (pymicro.xray.experiment.XraySource method)
discretize_geometry() (pymicro.xray.experiment.ObjectGeometry method)
disorientation() (pymicro.crystal.microstructure.Orientation method)
E
edf_info() (in module pymicro.file.file_utils)
edf_read() (in module pymicro.file.file_utils)
edf_write() (in module pymicro.file.file_utils)
edges_actor() (in module pymicro.view.vtk_utils)
Element (class in pymicro.xray.xray_utils)
elevationFilter() (in module pymicro.view.vtk_utils)
esrf_to_numpy_datatype() (in module pymicro.file.file_utils)
eu2ro() (pymicro.crystal.microstructure.Orientation static method)
Euler2Axis() (pymicro.crystal.microstructure.Orientation static method)
Euler2OrientationMatrix() (pymicro.crystal.microstructure.Orientation static method)
Euler2Quaternion() (pymicro.crystal.microstructure.Orientation static method)
Euler2Rodrigues() (pymicro.crystal.microstructure.Orientation static method)
execute() (pymicro.view.vtk_anim.vtkAnimationScene method)
(pymicro.view.vtk_anim.vtkAnimCameraAroundZ method)
(pymicro.view.vtk_anim.vtkAnimCameraToZ method)
(pymicro.view.vtk_anim.vtkAnimLine method)
(pymicro.view.vtk_anim.vtkMoveActor method)
(pymicro.view.vtk_anim.vtkRotateActorAroundAxis method)
(pymicro.view.vtk_anim.vtkSetVisibility method)
(pymicro.view.vtk_anim.vtkUpdateText method)
(pymicro.view.vtk_anim.vtkZoom method)
Experiment (class in pymicro.xray.experiment)
ExperimentEncoder (class in pymicro.xray.experiment)
extract_poly_data() (in module pymicro.view.vtk_utils)
F
f_atom() (in module pymicro.xray.xray_utils)
face_centered_cubic() (pymicro.crystal.lattice.Lattice static method)
face_centered_orthorhombic() (pymicro.crystal.lattice.Lattice static method)
find_neighbors() (pymicro.crystal.microstructure.Microstructure method)
find_planes_in_zone() (pymicro.crystal.lattice.HklDirection method)
fit() (in module pymicro.xray.fitting)
(pymicro.xray.fitting.FitFunction method)
FitFunction (class in pymicro.xray.fitting)
flat() (in module pymicro.view.vol_utils)
forward_simulation() (pymicro.xray.experiment.Experiment method)
ForwardSimulation (class in pymicro.xray.experiment)
four_to_three_indices() (pymicro.crystal.lattice.HklDirection static method)
(pymicro.crystal.lattice.HklPlane static method)
friedel_pair() (pymicro.crystal.lattice.HklPlane method)
from_amitex_fftp() (pymicro.crystal.microstructure.Microstructure method)
from_cif() (pymicro.crystal.lattice.Lattice static method)
from_dct() (pymicro.crystal.microstructure.Grain static method)
(pymicro.crystal.microstructure.Microstructure static method)
from_dict() (pymicro.crystal.lattice.CrystallinePhase static method)
from_dream3d() (pymicro.crystal.microstructure.Microstructure static method)
from_ebsd() (pymicro.crystal.microstructure.Microstructure static method)
from_euler() (pymicro.crystal.microstructure.Orientation static method)
from_grain_file() (pymicro.crystal.microstructure.Microstructure static method)
from_indices() (pymicro.crystal.lattice.SlipSystem static method)
from_labdct() (pymicro.crystal.microstructure.Microstructure static method)
from_legacy_h5() (pymicro.crystal.microstructure.Microstructure static method)
from_neper() (pymicro.crystal.microstructure.Microstructure static method)
from_parameters() (pymicro.crystal.lattice.Lattice static method)
from_poni() (pymicro.xray.detectors.RegArrayDetector2d static method)
from_Quaternion() (pymicro.crystal.microstructure.Orientation static method)
from_rodrigues() (pymicro.crystal.microstructure.Orientation static method)
from_space_group() (pymicro.crystal.lattice.Symmetry static method)
from_string() (pymicro.crystal.lattice.Symmetry static method)
from_symbol() (pymicro.crystal.lattice.Lattice static method)
from_symmetry() (pymicro.crystal.lattice.Lattice static method)
from_tsl() (pymicro.crystal.lattice.Symmetry static method)
fsim() (pymicro.xray.laue.LaueForwardSimulation method)
fsim_grain() (pymicro.xray.laue.LaueForwardSimulation method)
fsim_laue() (pymicro.xray.laue.LaueForwardSimulation static method)
fwhm() (pymicro.xray.fitting.Cosine method)
(pymicro.xray.fitting.Gaussian method)
(pymicro.xray.fitting.Lorentzian method)
(pymicro.xray.fitting.Voigt method)
fzDihedral() (pymicro.crystal.microstructure.Orientation static method)
G
Gaussian (class in pymicro.xray.fitting)
get_active_detector() (pymicro.xray.experiment.Experiment method)
get_all_grains() (pymicro.crystal.microstructure.Microstructure method)
get_attribute() (pymicro.core.samples.SampleData method)
get_bounding_box() (pymicro.xray.experiment.ObjectGeometry method)
get_color_from_field() (pymicro.crystal.texture.PoleFigure method)
get_description() (pymicro.core.samples.SampleData method)
get_dic_from_attributes() (pymicro.core.samples.SampleData method)
get_edges() (pymicro.xray.detectors.RegArrayDetector2d method)
get_family() (pymicro.crystal.lattice.HklPlane static method)
get_field() (pymicro.core.samples.SampleData method)
get_file_disk_size() (pymicro.core.samples.SampleData method)
get_gnomonic_edges() (in module pymicro.xray.laue)
get_grain() (pymicro.crystal.microstructure.Microstructure method)
get_grain_bounding_boxes() (pymicro.crystal.microstructure.Microstructure method)
get_grain_centers() (pymicro.crystal.microstructure.Microstructure method)
get_grain_ids() (pymicro.crystal.microstructure.Microstructure method)
(pymicro.xray.experiment.Sample method)
get_grain_map() (pymicro.crystal.microstructure.Microstructure method)
get_grain_orientations() (pymicro.crystal.microstructure.Microstructure method)
get_grain_positions() (pymicro.crystal.microstructure.Microstructure method)
get_grain_rodrigues() (pymicro.crystal.microstructure.Microstructure method)
get_grain_volume_fraction() (pymicro.crystal.microstructure.Microstructure method)
get_grain_volume_fractions() (pymicro.crystal.microstructure.Microstructure method)
get_grain_volumes() (pymicro.crystal.microstructure.Microstructure method)
get_grid_field_list() (pymicro.core.samples.SampleData method)
get_hkl_family() (pymicro.crystal.lattice.Lattice method)
get_ids_from_grain_map() (pymicro.crystal.microstructure.Microstructure method)
get_image() (pymicro.core.samples.SampleData method)
get_indexname_from_path() (pymicro.core.samples.SampleData method)
get_ipf_colour() (pymicro.crystal.microstructure.Orientation method)
get_lattice() (pymicro.crystal.lattice.CrystallinePhase method)
(pymicro.crystal.microstructure.Microstructure method)
get_lattice_parameters() (pymicro.crystal.lattice.Lattice method)
get_mask() (pymicro.crystal.microstructure.Microstructure method)
get_material() (pymicro.xray.experiment.Sample method)
get_mesh() (pymicro.core.samples.SampleData method)
get_mesh_elem_tag() (pymicro.core.samples.SampleData method)
get_mesh_elem_tag_connectivity() (pymicro.core.samples.SampleData method)
get_mesh_elem_tags_names() (pymicro.core.samples.SampleData method)
get_mesh_elem_types_and_number() (pymicro.core.samples.SampleData method)
get_mesh_elements() (pymicro.core.samples.SampleData method)
get_mesh_from_image() (pymicro.core.samples.SampleData method)
get_mesh_node_tag() (pymicro.core.samples.SampleData method)
get_mesh_node_tag_coordinates() (pymicro.core.samples.SampleData method)
get_mesh_node_tags_names() (pymicro.core.samples.SampleData method)
get_mesh_nodes() (pymicro.core.samples.SampleData method)
get_mesh_nodesID() (pymicro.core.samples.SampleData method)
get_mesh_xdmf_connectivity() (pymicro.core.samples.SampleData method)
get_microstructure() (pymicro.xray.experiment.Sample method)
get_node() (pymicro.core.samples.SampleData method)
get_node_disk_size() (pymicro.core.samples.SampleData method)
get_number_of_detectors() (pymicro.xray.experiment.Experiment method)
get_number_of_grains() (pymicro.crystal.microstructure.Microstructure method)
get_number_of_phases() (pymicro.crystal.microstructure.Microstructure method)
get_orientations() (pymicro.crystal.texture.PoleFigure method)
get_origin() (pymicro.xray.detectors.RegArrayDetector2d method)
get_parameter_names() (pymicro.xray.fitting.FitFunction method)
get_parameters() (pymicro.xray.fitting.FitFunction method)
get_phase() (pymicro.crystal.microstructure.Microstructure method)
get_phase_ids_list() (pymicro.crystal.microstructure.Microstructure method)
get_phase_map() (pymicro.crystal.microstructure.Microstructure method)
get_pixel_size() (pymicro.xray.detectors.RegArrayDetector2d method)
get_positions() (pymicro.xray.experiment.ObjectGeometry method)
get_sample() (pymicro.xray.experiment.Experiment method)
get_sample_name() (pymicro.core.samples.SampleData method)
get_size_mm() (pymicro.xray.detectors.RegArrayDetector2d method)
get_size_px() (pymicro.xray.detectors.RegArrayDetector2d method)
get_slip_direction() (pymicro.crystal.lattice.SlipSystem method)
get_slip_plane() (pymicro.crystal.lattice.SlipSystem method)
get_slip_systems() (pymicro.crystal.lattice.Lattice method)
(pymicro.crystal.lattice.SlipSystem static method)
get_slits() (pymicro.xray.experiment.Experiment method)
get_source() (pymicro.xray.experiment.Experiment method)
get_symmetry() (pymicro.crystal.lattice.CrystallinePhase method)
(pymicro.crystal.lattice.Lattice method)
get_table_description() (pymicro.core.samples.SampleData method)
get_tablecol() (pymicro.core.samples.SampleData method)
get_volume() (pymicro.crystal.microstructure.Grain method)
get_volume_fraction() (pymicro.crystal.microstructure.Grain method)
get_voxel_size() (pymicro.crystal.microstructure.Microstructure method)
gnomonic_projection() (in module pymicro.xray.laue)
gnomonic_projection_point() (in module pymicro.xray.laue)
goss() (pymicro.crystal.microstructure.Orientation static method)
Grain (class in pymicro.crystal.microstructure)
grain_3d() (in module pymicro.view.vtk_utils)
grain_projection_exp() (pymicro.xray.dct.DctForwardSimulation method)
grain_projection_image() (pymicro.xray.dct.DctForwardSimulation method)
grain_projection_simulation() (pymicro.xray.dct.DctForwardSimulation method)
grain_projections() (pymicro.xray.dct.DctForwardSimulation method)
gray_cmap() (in module pymicro.view.vtk_utils)
grid_vol_view() (in module pymicro.view.vtk_utils)
guess_symmetry() (pymicro.crystal.lattice.Lattice method)
guess_symmetry_from_parameters() (pymicro.crystal.lattice.Lattice static method)
H
h (pymicro.crystal.lattice.HklObject property)
has_grains() (pymicro.xray.experiment.Sample method)
hexagonal (pymicro.crystal.lattice.Symmetry attribute)
hexagonal() (pymicro.crystal.lattice.Lattice static method)
hexagonal_lattice_grid() (in module pymicro.view.vtk_utils)
hist() (in module pymicro.view.vol_utils)
HklDirection (class in pymicro.crystal.lattice)
HklObject (class in pymicro.crystal.lattice)
HklPlane (class in pymicro.crystal.lattice)
hot_cmap() (in module pymicro.view.vtk_utils)
HST_info() (in module pymicro.file.file_utils)
HST_read() (in module pymicro.file.file_utils)
HST_write() (in module pymicro.file.file_utils)
hsv_cmap() (in module pymicro.view.vtk_utils)
I
id_list_to_condition() (pymicro.crystal.microstructure.Microstructure static method)
identify_hkl_from_list() (in module pymicro.xray.laue)
index() (in module pymicro.xray.laue)
indices_from_two_directions() (pymicro.crystal.lattice.HklPlane static method)
inFZ() (pymicro.crystal.microstructure.Orientation method)
interplanar_spacing() (pymicro.crystal.lattice.HklPlane method)
invert_cmap() (in module pymicro.view.vtk_utils)
ipf_cmap() (pymicro.crystal.microstructure.Microstructure method)
ipf_color() (pymicro.crystal.microstructure.Orientation method)
is_in_array() (in module pymicro.view.vtk_utils)
is_in_list() (pymicro.crystal.lattice.HklPlane method)
is_same_family() (pymicro.crystal.lattice.HklPlane static method)
J
jet_cmap() (in module pymicro.view.vtk_utils)
K
k (pymicro.crystal.lattice.HklObject property)
L
l (pymicro.crystal.lattice.HklObject property)
lab_to_pixel() (pymicro.xray.detectors.RegArrayDetector2d method)
lambda_angstrom_to_keV() (in module pymicro.xray.xray_utils)
lambda_keV_to_angstrom() (in module pymicro.xray.xray_utils)
lambda_keV_to_nm() (in module pymicro.xray.xray_utils)
lambda_nm_to_keV() (in module pymicro.xray.xray_utils)
Lattice (class in pymicro.crystal.lattice)
lattice (pymicro.crystal.lattice.HklObject property)
lattice_3d() (in module pymicro.view.vtk_utils)
lattice_3d_with_plane_series() (in module pymicro.view.vtk_utils)
lattice_3d_with_planes() (in module pymicro.view.vtk_utils)
lattice_edges() (in module pymicro.view.vtk_utils)
lattice_grid() (in module pymicro.view.vtk_utils)
lattice_points() (in module pymicro.view.vtk_utils)
lattice_vertices() (in module pymicro.view.vtk_utils)
LaueForwardSimulation (class in pymicro.xray.laue)
lin_reg() (in module pymicro.xray.fitting)
line_3d() (in module pymicro.view.vtk_utils)
line_actor() (in module pymicro.view.vtk_utils)
load() (pymicro.xray.experiment.Experiment static method)
load_grain() (pymicro.xray.dct.DctForwardSimulation method)
load_image() (pymicro.xray.detectors.RegArrayDetector2d method)
(pymicro.xray.detectors.Xpad method)
load_STL_actor() (in module pymicro.view.vtk_utils)
load_vtk_repr() (pymicro.crystal.microstructure.Grain method)
Lorentzian (class in pymicro.xray.fitting)
M
map_data() (in module pymicro.view.vtk_utils)
map_data_with_clip() (in module pymicro.view.vtk_utils)
Mar165 (class in pymicro.xray.detectors)
match_grains() (pymicro.crystal.microstructure.Microstructure method)
match_orientation() (pymicro.crystal.microstructure.Microstructure method)
matrix (pymicro.crystal.lattice.Lattice property)
max_energy (pymicro.xray.experiment.XraySource property)
merge_dct_scans() (in module pymicro.xray.dct)
merge_microstructures() (pymicro.crystal.microstructure.Microstructure static method)
mesh_grain_map() (pymicro.crystal.microstructure.Microstructure method)
Microstructure (class in pymicro.crystal.microstructure)
miller_indices() (pymicro.crystal.lattice.HklObject method)
min_energy (pymicro.xray.experiment.XraySource property)
min_max_cumsum() (in module pymicro.view.vol_utils)
minimal_data_model() (pymicro.core.samples.SampleData method)
(pymicro.crystal.microstructure.Microstructure method)
misorientation_angle_from_delta() (pymicro.crystal.microstructure.Orientation static method)
misorientation_axis() (pymicro.crystal.microstructure.Orientation method)
misorientation_axis_from_delta() (pymicro.crystal.microstructure.Orientation static method)
misorientation_MacKenzie() (pymicro.crystal.microstructure.Orientation static method)
module
pymicro.__init__
pymicro.apps
pymicro.apps.ImageViewer
pymicro.apps.View
pymicro.core
pymicro.core.samples
pymicro.crystal
pymicro.crystal.lattice
pymicro.crystal.microstructure
pymicro.crystal.texture
pymicro.file.file_utils
pymicro.view.vol_utils
pymicro.view.vtk_anim
pymicro.view.vtk_utils
pymicro.xray
pymicro.xray.dct
pymicro.xray.detectors
pymicro.xray.experiment
pymicro.xray.fitting
pymicro.xray.laue
pymicro.xray.xray_utils
monoclinic (pymicro.crystal.lattice.Symmetry attribute)
monoclinic() (pymicro.crystal.lattice.Lattice static method)
move_rotation_to_FZ() (pymicro.crystal.lattice.Symmetry method)
move_to_FZ() (pymicro.crystal.microstructure.Orientation method)
move_vector_to_FZ() (pymicro.crystal.lattice.Symmetry method)
multiplicity() (pymicro.crystal.lattice.HklPlane method)
N
name (pymicro.xray.xray_utils.Element property)
normal() (pymicro.crystal.lattice.HklPlane method)
numpy_array_to_vtk_grid() (in module pymicro.view.vtk_utils)
numpy_to_esrf_datatype() (in module pymicro.file.file_utils)
O
ObjectGeometry (class in pymicro.xray.experiment)
Orientation (class in pymicro.crystal.microstructure)
orientation_matrix() (pymicro.crystal.microstructure.Grain method)
(pymicro.crystal.microstructure.Orientation method)
OrientationMatrix2Euler() (pymicro.crystal.microstructure.Orientation static method)
OrientationMatrix2EulerSF() (pymicro.crystal.microstructure.Orientation static method)
OrientationMatrix2Quaternion() (pymicro.crystal.microstructure.Orientation static method)
OrientationMatrix2Rodrigues() (pymicro.crystal.microstructure.Orientation static method)
orthorhombic (pymicro.crystal.lattice.Symmetry attribute)
orthorhombic() (pymicro.crystal.lattice.Lattice static method)
orthotropic_constants_from_stiffness() (pymicro.crystal.lattice.Symmetry static method)
output_tikzpicture() (in module pymicro.xray.dct)
P
Parameter (class in pymicro.xray.fitting)
pause_for_visualization() (pymicro.core.samples.SampleData method)
PerkinElmer1620 (class in pymicro.xray.detectors)
Phi() (pymicro.crystal.microstructure.Orientation method)
phi1() (pymicro.crystal.microstructure.Orientation method)
phi2() (pymicro.crystal.microstructure.Orientation method)
pin_hole() (in module pymicro.view.vtk_utils)
pixel_to_lab() (pymicro.xray.detectors.RegArrayDetector2d method)
plot() (pymicro.crystal.texture.PoleFigure static method)
plot_all_dif_spots() (in module pymicro.xray.dct)
plot_crystal_dir() (pymicro.crystal.texture.PoleFigure method)
plot_euler() (pymicro.crystal.texture.PoleFigure static method)
plot_ipf() (pymicro.crystal.texture.PoleFigure method)
plot_line_between_crystal_dir() (pymicro.crystal.texture.PoleFigure method)
plot_pf() (pymicro.crystal.texture.PoleFigure method)
plot_pf_background() (pymicro.crystal.texture.PoleFigure method)
plot_pf_contour() (pymicro.crystal.texture.PoleFigure method)
plot_pf_dir() (pymicro.crystal.texture.PoleFigure method)
plot_pole_figures() (pymicro.crystal.texture.PoleFigure method)
plot_slip_traces() (pymicro.crystal.lattice.HklPlane static method)
plot_sst() (pymicro.crystal.texture.PoleFigure method)
plot_xray_trans() (in module pymicro.xray.xray_utils)
plot_XY_slip_traces() (pymicro.crystal.lattice.HklPlane static method)
plot_XZ_slip_traces() (pymicro.crystal.lattice.HklPlane static method)
plot_YZ_slip_traces() (pymicro.crystal.lattice.HklPlane static method)
point_cloud_3d() (in module pymicro.view.vtk_utils)
pole_figure_3d() (in module pymicro.view.vtk_utils)
PoleFigure (class in pymicro.crystal.texture)
poll_system() (in module pymicro.xray.laue)
post_execute() (pymicro.view.vtk_anim.vtkAnimation method)
pre_execute() (pymicro.view.vtk_anim.vtkAnimation method)
print_data_arrays_info() (pymicro.core.samples.SampleData method)
print_dataset_content() (pymicro.core.samples.SampleData method)
print_grains_info() (pymicro.crystal.microstructure.Microstructure method)
print_grids_info() (pymicro.core.samples.SampleData method)
print_group_content() (pymicro.core.samples.SampleData method)
print_index() (pymicro.core.samples.SampleData method)
print_node_attributes() (pymicro.core.samples.SampleData method)
print_node_compression_info() (pymicro.core.samples.SampleData method)
print_node_info() (pymicro.core.samples.SampleData method)
print_xdmf() (pymicro.core.samples.SampleData method)
print_zset_material_block() (pymicro.crystal.microstructure.Microstructure method)
project_along_direction() (pymicro.xray.detectors.RegArrayDetector2d method)
pv_rand_cmap() (in module pymicro.view.vtk_utils)
pymicro.__init__
module
pymicro.apps
module
pymicro.apps.ImageViewer
module
pymicro.apps.View
module
pymicro.core
module
pymicro.core.samples
module
pymicro.crystal
module
pymicro.crystal.lattice
module
pymicro.crystal.microstructure
module
pymicro.crystal.texture
module
pymicro.file.file_utils
module
pymicro.view.vol_utils
module
pymicro.view.vtk_anim
module
pymicro.view.vtk_utils
module
pymicro.xray
module
pymicro.xray.dct
module
pymicro.xray.detectors
module
pymicro.xray.experiment
module
pymicro.xray.fitting
module
pymicro.xray.laue
module
pymicro.xray.xray_utils
module
pyplot_cmap() (in module pymicro.view.vtk_utils)
Q
Quaternion2Euler() (pymicro.crystal.microstructure.Orientation static method)
Quaternion2OrientationMatrix() (pymicro.crystal.microstructure.Orientation static method)
R
radiograph() (in module pymicro.xray.xray_utils)
radiographs() (in module pymicro.xray.xray_utils)
rand_cmap() (in module pymicro.view.vtk_utils)
(pymicro.crystal.microstructure.Microstructure static method)
random() (pymicro.crystal.microstructure.Orientation static method)
random_texture() (pymicro.crystal.microstructure.Microstructure static method)
rawmar_read() (in module pymicro.file.file_utils)
read_euler_from_zset_inp() (pymicro.crystal.microstructure.Orientation static method)
read_euler_txt() (pymicro.crystal.microstructure.Orientation static method)
read_image_data() (in module pymicro.view.vtk_utils)
read_image_sequence() (in module pymicro.file.file_utils)
read_orientations() (pymicro.crystal.microstructure.Orientation static method)
recad() (in module pymicro.view.vol_utils)
recad_vol() (in module pymicro.file.file_utils)
reciprocal_lattice() (pymicro.crystal.lattice.Lattice method)
recompute_grain_bounding_boxes() (pymicro.crystal.microstructure.Microstructure method)
recompute_grain_centers() (pymicro.crystal.microstructure.Microstructure method)
recompute_grain_volumes() (pymicro.crystal.microstructure.Microstructure method)
RegArrayDetector2d (class in pymicro.xray.detectors)
region_growing() (in module pymicro.view.vol_utils)
remove_attribute() (pymicro.core.samples.SampleData method)
remove_attributes() (pymicro.core.samples.SampleData method)
remove_grains_from_table() (pymicro.crystal.microstructure.Microstructure method)
remove_grains_not_in_map() (pymicro.crystal.microstructure.Microstructure method)
remove_node() (pymicro.core.samples.SampleData method)
remove_small_grains() (pymicro.crystal.microstructure.Microstructure method)
rename_node() (pymicro.core.samples.SampleData method)
render() (in module pymicro.view.vtk_utils)
(pymicro.view.vtk_anim.vtkAnimationScene method)
render_at() (pymicro.view.vtk_anim.vtkAnimationScene method)
renumber_grains() (pymicro.crystal.microstructure.Microstructure method)
repack_h5file() (pymicro.core.samples.SampleData method)
rhombohedral() (pymicro.crystal.lattice.Lattice static method)
Rodrigues2Axis() (pymicro.crystal.microstructure.Orientation static method)
Rodrigues2OrientationMatrix() (pymicro.crystal.microstructure.Orientation static method)
rotating_crystal() (pymicro.crystal.microstructure.Orientation method)
S
s3() (pymicro.crystal.microstructure.Orientation static method)
sagital_regroup() (pymicro.xray.detectors.Detector2d method)
Sample (class in pymicro.xray.experiment)
SampleData (class in pymicro.core.samples)
save() (pymicro.xray.experiment.Experiment method)
save_vtk_repr() (pymicro.crystal.microstructure.Grain method)
scattering_vector() (pymicro.crystal.lattice.HklPlane method)
schmid_factor() (pymicro.crystal.microstructure.Grain method)
(pymicro.crystal.microstructure.Orientation method)
select() (in module pymicro.view.vtk_utils)
select_lambda() (in module pymicro.xray.laue)
set() (pymicro.xray.fitting.Parameter method)
set_active_grain_map() (pymicro.crystal.microstructure.Microstructure method)
set_actor() (pymicro.view.vtk_anim.vtkRotateActorAroundAxis method)
set_array() (pymicro.xray.experiment.ObjectGeometry method)
set_binning() (pymicro.xray.detectors.RegArrayDetector2d method)
set_bounding_boxes() (pymicro.crystal.microstructure.Microstructure method)
set_centers() (pymicro.crystal.microstructure.Microstructure method)
set_chunkshape_and_compression() (pymicro.core.samples.SampleData method)
set_description() (pymicro.core.samples.SampleData method)
set_diffracting_famillies() (pymicro.xray.dct.DctForwardSimulation method)
set_energy() (pymicro.xray.experiment.XraySource method)
set_energy_range() (pymicro.xray.experiment.XraySource method)
set_experiment() (pymicro.xray.experiment.ForwardSimulation method)
(pymicro.xray.laue.LaueForwardSimulation method)
set_gamma() (pymicro.xray.fitting.Lorentzian method)
set_geometry() (pymicro.xray.experiment.Sample method)
set_grain_map() (pymicro.crystal.microstructure.Microstructure method)
set_height() (pymicro.xray.fitting.Gaussian method)
(pymicro.xray.fitting.Lorentzian method)
(pymicro.xray.fitting.Voigt method)
set_hkl_planes() (pymicro.xray.dct.DctForwardSimulation method)
(pymicro.xray.laue.LaueForwardSimulation method)
set_hkl_poles() (pymicro.crystal.texture.PoleFigure method)
set_lattice() (pymicro.crystal.lattice.CrystallinePhase method)
(pymicro.crystal.lattice.HklObject method)
(pymicro.crystal.microstructure.Microstructure method)
set_map_field() (pymicro.crystal.texture.PoleFigure method)
set_mask() (pymicro.crystal.microstructure.Microstructure method)
set_material() (pymicro.xray.experiment.Sample method)
set_max_energy() (pymicro.xray.experiment.XraySource method)
set_mesh() (pymicro.crystal.microstructure.Microstructure method)
set_microstructure() (pymicro.xray.experiment.Sample method)
set_min_energy() (pymicro.xray.experiment.XraySource method)
set_name() (pymicro.xray.experiment.Sample method)
(pymicro.xray.fitting.Parameter method)
set_new_indexname() (pymicro.core.samples.SampleData method)
set_nodes_compression_chunkshape() (pymicro.core.samples.SampleData method)
set_opacity() (in module pymicro.view.vtk_utils)
set_orientations() (pymicro.crystal.microstructure.Microstructure method)
set_origin() (pymicro.core.samples.SampleData method)
(pymicro.xray.experiment.ObjectGeometry method)
set_phase() (pymicro.crystal.microstructure.Microstructure method)
set_phase_map() (pymicro.crystal.microstructure.Microstructure method)
set_phases() (pymicro.crystal.microstructure.Microstructure method)
set_position() (pymicro.xray.experiment.Sample method)
(pymicro.xray.experiment.SlitsGeometry method)
(pymicro.xray.experiment.XraySource method)
(pymicro.xray.fitting.Cosine method)
(pymicro.xray.fitting.Gaussian method)
(pymicro.xray.fitting.Lorentzian method)
(pymicro.xray.fitting.Voigt method)
set_random_orientations() (pymicro.crystal.microstructure.Microstructure method)
set_sample() (pymicro.xray.experiment.Experiment method)
set_sample_name() (pymicro.core.samples.SampleData method)
set_sigma() (pymicro.xray.fitting.Gaussian method)
(pymicro.xray.fitting.Voigt method)
set_slits() (pymicro.xray.experiment.Experiment method)
set_source() (pymicro.xray.experiment.Experiment method)
set_tablecol() (pymicro.core.samples.SampleData method)
set_type() (pymicro.xray.experiment.ObjectGeometry method)
set_u_dir() (pymicro.xray.detectors.RegArrayDetector2d method)
set_use_energy_limits() (pymicro.xray.laue.LaueForwardSimulation method)
set_v_dir() (pymicro.xray.detectors.RegArrayDetector2d method)
set_verbosity() (pymicro.core.samples.SampleData method)
set_volumes() (pymicro.crystal.microstructure.Microstructure method)
set_voxel_size() (pymicro.core.samples.SampleData method)
set_width() (pymicro.xray.fitting.Cosine method)
setup() (pymicro.xray.dct.DctForwardSimulation method)
(pymicro.xray.laue.LaueForwardSimulation method)
setup_camera() (in module pymicro.view.vtk_utils)
SetVtkMesh() (pymicro.crystal.microstructure.Grain method)
shear() (pymicro.crystal.microstructure.Orientation static method)
show_array() (in module pymicro.view.vtk_utils)
show_boundaries() (in module pymicro.view.vtk_utils)
show_grains() (in module pymicro.view.vtk_utils)
show_mesh() (in module pymicro.view.vtk_utils)
skip_higher_order() (pymicro.crystal.lattice.HklObject static method)
slip_system_orientation_rotation_tensor() (pymicro.crystal.microstructure.Orientation method)
slip_system_orientation_strain_tensor() (pymicro.crystal.microstructure.Orientation method)
slip_system_orientation_tensor() (pymicro.crystal.microstructure.Orientation method)
slip_trace() (pymicro.crystal.lattice.HklPlane method)
SlipSystem (class in pymicro.crystal.lattice)
slits() (in module pymicro.view.vtk_utils)
SlitsGeometry (class in pymicro.xray.experiment)
solve_trig_equation() (pymicro.crystal.microstructure.Orientation static method)
sst_symmetry() (pymicro.crystal.texture.PoleFigure method)
sst_symmetry_cubic() (pymicro.crystal.texture.PoleFigure static method)
stiffness_matrix() (pymicro.crystal.lattice.Symmetry method)
stitch() (in module pymicro.view.vol_utils)
SumOfFitFunction (class in pymicro.xray.fitting)
switch_verbosity() (pymicro.core.samples.SampleData method)
symbol (pymicro.xray.xray_utils.Element property)
Symmetry (class in pymicro.crystal.lattice)
symmetry() (pymicro.crystal.lattice.Lattice static method)
symmetry_operators() (pymicro.crystal.lattice.Symmetry method)
sync() (pymicro.core.samples.SampleData method)
sync_grain_table_with_grain_map() (pymicro.crystal.microstructure.Microstructure method)
sync_phases() (pymicro.crystal.microstructure.Microstructure method)
T
TaylorModel (class in pymicro.crystal.texture)
tetragonal (pymicro.crystal.lattice.Symmetry attribute)
tetragonal() (pymicro.crystal.lattice.Lattice static method)
text() (in module pymicro.view.vtk_utils)
three_to_four_indices() (pymicro.crystal.lattice.HklDirection static method)
(pymicro.crystal.lattice.HklPlane static method)
to_amitex_fftp() (pymicro.crystal.microstructure.Microstructure method)
to_crystal() (pymicro.crystal.microstructure.Orientation method)
to_dict() (pymicro.crystal.lattice.CrystallinePhase method)
to_dream3d() (pymicro.crystal.microstructure.Microstructure method)
to_sample() (pymicro.crystal.microstructure.Orientation method)
to_string() (pymicro.crystal.lattice.Symmetry method)
to_vtk_type() (in module pymicro.view.vtk_utils)
topotomo_tilts() (pymicro.crystal.microstructure.Orientation method)
transformation_matrix() (in module pymicro.xray.laue)
triclinic (pymicro.crystal.lattice.Symmetry attribute)
triclinic() (pymicro.crystal.lattice.Lattice static method)
trigonal (pymicro.crystal.lattice.Symmetry attribute)
triplet_indexing() (in module pymicro.xray.laue)
tt_rock() (in module pymicro.xray.dct)
tt_stack() (in module pymicro.xray.dct)
U
unit_arrow_3d() (in module pymicro.view.vtk_utils)
unpack_header() (in module pymicro.file.file_utils)
V
Varian2520 (class in pymicro.xray.detectors)
View (class in pymicro.apps.View)
view_slice() (pymicro.crystal.microstructure.Microstructure method)
Voigt (class in pymicro.xray.fitting)
vol_view() (in module pymicro.view.vtk_utils)
volren() (in module pymicro.view.vtk_utils)
volume() (pymicro.crystal.lattice.Lattice method)
voronoi() (pymicro.crystal.microstructure.Microstructure static method)
vtk_file_name() (pymicro.crystal.microstructure.Grain method)
Vtk_write() (in module pymicro.file.file_utils)
vtkAnimation (class in pymicro.view.vtk_anim)
vtkAnimationScene (class in pymicro.view.vtk_anim)
vtkAnimCameraAroundZ (class in pymicro.view.vtk_anim)
vtkAnimCameraToZ (class in pymicro.view.vtk_anim)
vtkAnimLine (class in pymicro.view.vtk_anim)
vtkMoveActor (class in pymicro.view.vtk_anim)
vtkRotateActorAroundAxis (class in pymicro.view.vtk_anim)
vtkRotateActorAroundZAxis (class in pymicro.view.vtk_anim)
vtkSetVisibility (class in pymicro.view.vtk_anim)
vtkUpdateText (class in pymicro.view.vtk_anim)
vtkZoom (class in pymicro.view.vtk_anim)
W
write_image() (pymicro.view.vtk_anim.vtkAnimationScene method)
write_xdmf() (pymicro.core.samples.SampleData method)
X
Xpad (class in pymicro.xray.detectors)
xray_arrow() (in module pymicro.view.vtk_utils)
XraySource (class in pymicro.xray.experiment)
Z
zone_axis_list() (in module pymicro.xray.laue)
zone_plate() (in module pymicro.view.vtk_utils)
Zrot2OrientationMatrix() (pymicro.crystal.microstructure.Orientation static method)
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